{"id":56,"date":"2014-12-16T10:46:36","date_gmt":"2014-12-16T10:46:36","guid":{"rendered":"http:\/\/lchalmandrier.legtux.org\/research\/?page_id=56"},"modified":"2018-05-24T17:31:45","modified_gmt":"2018-05-24T17:31:45","slug":"r-ressources","status":"publish","type":"page","link":"http:\/\/lchalmandrier.legtux.org\/research\/r-ressources\/","title":{"rendered":"Code"},"content":{"rendered":"<p>Here you can find ready to use code material related to my work. I also have a poorly maintained <a href=\"https:\/\/github.com\/loicchr\">Github account<\/a>.<\/p>\n<p><strong>R-package Select: Determines Species Probabilities Based on Functional Traits (R) <a href=\"https:\/\/cran.r-project.org\/web\/packages\/Select\/index.html\">https:\/\/cran.r-project.org\/web\/packages\/Select\/index.html<br \/>\n<\/a><\/strong>Related paper: D. Laughlin, <strong>L. Chalmandrier<\/strong> et al. 2018 <a href=\"http:\/\/lchalmandrier.legtux.org\/research\/wp-content\/uploads\/2018\/05\/Laughlin_et_al-2018-Methods_in_Ecology_and_Evolution.pdfhttp:\/\/lchalmandrier.legtux.org\/research\/wp-content\/uploads\/2018\/05\/Laughlin_et_al-2018-Methods_in_Ecology_and_Evolution.pdf\">Early view<\/a><br \/>\nDescription: Restoration ecologists aim to re-establish diverse, functioning communities. This R package produces a species assemblage (i.e., a species relative abundance distribution) based on a user-defined functional trait profile. The species abundances can converge on specific community-weighted mean trait values and this function can simultaneously maximize functional diversity.<\/p>\n<p><strong>Time lag community model (Matlab)<br \/>\n<\/strong>Related paper: <a href=\"http:\/\/lchalmandrier.legtux.org\/research\/wp-content\/uploads\/2018\/03\/Alexander_et_al-2017-Global_Change_Biology.pdf\">Alexander, Chalmandrier et al. 2017 Global Change Biology<\/a><br \/>\n<a href=\"http:\/\/lchalmandrier.legtux.org\/research\/wp-content\/uploads\/2018\/05\/TimeLagModel.zip\">Here<\/a><\/p>\n<p><strong>alpha, beta, gamma decomposition with parametrization of the dominance and similarity effect (R)<\/strong><br \/>\nRelated paper: <a href=\"http:\/\/lchalmandrier.legtux.org\/research\/wp-content\/uploads\/2015\/02\/ChalmandrierEcology2015.pdf\">Chalmandrier et al. 2015 Ecology<\/a><br \/>\n<a href=\"http:\/\/lchalmandrier.legtux.org\/research\/wp-content\/uploads\/2015\/02\/abgFunctions.txt\">Main function<\/a> and <a href=\"http:\/\/lchalmandrier.legtux.org\/research\/wp-content\/uploads\/2015\/02\/example.txt\">example of use<\/a>.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Here you can find ready to use code material related to my work. I also have a poorly maintained Github account. R-package Select: Determines Species Probabilities Based on Functional Traits (R) https:\/\/cran.r-project.org\/web\/packages\/Select\/index.html Related paper: D. Laughlin, L. Chalmandrier et al. 2018 Early view Description: Restoration ecologists aim to re-establish diverse, functioning communities. This R package [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-56","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/lchalmandrier.legtux.org\/research\/wp-json\/wp\/v2\/pages\/56","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/lchalmandrier.legtux.org\/research\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/lchalmandrier.legtux.org\/research\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/lchalmandrier.legtux.org\/research\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/lchalmandrier.legtux.org\/research\/wp-json\/wp\/v2\/comments?post=56"}],"version-history":[{"count":9,"href":"http:\/\/lchalmandrier.legtux.org\/research\/wp-json\/wp\/v2\/pages\/56\/revisions"}],"predecessor-version":[{"id":214,"href":"http:\/\/lchalmandrier.legtux.org\/research\/wp-json\/wp\/v2\/pages\/56\/revisions\/214"}],"wp:attachment":[{"href":"http:\/\/lchalmandrier.legtux.org\/research\/wp-json\/wp\/v2\/media?parent=56"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}